Motif HL_12758.1 Version HL_12758.1 of this group appears in releases 3.77 to 3.81
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-18 | 5-8 | 5-15 | 6-9 | 6-16 | 7-10 | 7-17 | 8-11 | 9-12 | 10-13 | 11-14 | 11-15 | 12-16 | 13-17 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5V3F_001 | 5V3F | 0.6382 | 6 | G-quadruplex | A | RNA (31-MER) | C | 4 | G | 5 | A | 6 | A | 7 | G | 8 | G | 9 | G | 10 | G | 13 | G | 14 | G | 16 | G | 18 | G | 19 | G | 21 | A | 22 | G | 23 | G | 24 | G | 26 | A | 27 | G | 28 | cWW | tSH | cWH | cHW | cWH | cHW | cHW | cWH | cWH | cWH | cHW | tSH | cWH | cWH | cHW |
| 2 | HL_6C63_001 | 6C63 | 0.0000 | 7 | G-quadruplex | A | RNA (36-MER) | C | 6 | G | 7 | A | 8 | A | 9 | G | 10 | G | 11 | G | 13 | G | 15 | G | 16 | G | 18 | G | 20 | G | 21 | G | 24 | A | 25 | G | 26 | G | 27 | G | 29 | A | 30 | G | 31 | cWW | tSH | cWH | cHW | cWH | cHW | cHW | cWH | cWH | cWH | cHW | tSH | cWH | cWH | cHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGGGACGGUGCGGAGAGGAGAG | 1 |
| CGAAGGAGAGGAGAGGAAGAGGAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGGGACGGUGCGGAGAGGAGA | 1 |
| GAAGGAGAGGAGAGGAAGAGGAGA | 1 |
- Annotations
-
- G-quadruplex (2)
- Basepair signature
- cWW-tSH-F-F-F-cWH-cHW-cWH-cHW-cHW-cWH-F-cWH-F-cWH-cHW-tSH-cWH-cWH-cHW
- Heat map statistics
- Min 0.64 | Avg 0.32 | Max 0.64
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