Motif HL_13798.1 Version HL_13798.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_036 | 2ZJR | 0.0000 | 1 | Pseudoknot (H) | X | LSU rRNA | C | 1466 | U | 1467 | A | 1468 | U | 1469 | G | 1470 | G | 1471 | C | 1472 | U | 1473 | A | 1474 | G | 1476 | cWW |
| 2 | HL_3PYO_036 | 3PYO | 0.7323 | 1 | A | 23S ribosomal RNA | C | 1450 | C | 1451 | A | 1453 | U | 1454 | G | 1455 | G | 1456 | A | 1457 | C | 1458 | G | 1459 | G | 1461 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAUGGCUAUG | 1 |
| CCAUGGACGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUGGCUAU | 1 |
| CAUGGACGA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_13798.1 | Only in the child motif |
|---|---|---|---|
| HL_15771.1 Compare | HL_2ZJR_036 | HL_3PYO_036 |
- Annotations
-
- Pseudoknot (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.73 | Avg 0.37 | Max 0.73
Coloring options: