Motif HL_13963.2 Version HL_13963.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_163 | 5J7L | 0.7648 | 4 | DA | LSU rRNA | G | 1171 | U | 1173 | G | 1177 | C | 1178 | ncWW | |
| 2 | HL_361D_001 | 361D | 0.0343 | 2 | A | RNA (20-mer) | G | 86 | G | 87 | A | 89|||A | C | 90 | cWW | ntSH |
| 3 | HL_361D_002 | 361D | 0.0000 | 2 | B | RNA (20-mer) | G | 86 | G | 87 | A | 89|||A | C | 90 | cWW | ntSH |
| 4 | HL_2ZZM_002 | 2ZZM | 0.2996 | 5 | B | RNA (84-MER) | G | 31 | C | 32 | A | 38 | C | 39 | cWW | ncWW |
| 5 | HL_1KH6_003 | 1KH6 | 0.7167 | 0 | A | JIIIabc | C | 42 | G | 43 | 5BU | 44 | G | 45 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGCGAC | 2 |
| GCUUAUGC | 1 |
| GCCUAGGAC | 1 |
| CG(5BU)G | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCGA | 2 |
| CUUAUG | 1 |
| CCUAGGA | 1 |
| G(5BU) | 1 |
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