Motif HL_14201.1 Version HL_14201.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5X2G_002 | 5X2G | 0.4260 | 2 | B | sgRNA | G | 54 | U | 56 | U | 57 | G | 58 | C | 59 | G | 60 | G | 61 | G | 62 | C | 64 | cWW | ncSH | |||
| 2 | HL_5J7L_134 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | U | 59 | G | 60 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | |||
| 3 | HL_4LVW_001 | 4LVW | 0.8742 | 4 | A | THF riboswitch | A | 33 | A | 34 | U | 35 | A | 39 | U | 40 | G | 41 | U | 42 | G | 44 | U | 45 | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUGCGGGAC | 1 |
| UGCUAAUCUG | 1 |
| AAUGGGAUGUCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUGCGGGA | 1 |
| GCUAAUCU | 1 |
| AUGGGAUGUCG | 1 |
- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.43 | Avg 0.50 | Max 0.95
Coloring options: