Motif HL_14612.1 Version HL_14612.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3R4F_002 | 3R4F | 0.4924 | 0 | A | pRNA | A | 51 | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW | ||
| 2 | HL_3R4F_004 | 3R4F | 0.4924 | 0 | A | pRNA | A | 51||||15_545 | U | 52||||15_545 | G | 53||||15_545 | G | 54||||15_545 | U | 55||||15_545 | U | 56||||15_545 | G | 57||||15_545 | U | 58||||15_545 | cWW | ncWW | ||
| 3 | HL_4V8P_137 | 4V8P | 0.1385 | 1 | D1 | LSU rRNA | C | 2605 | U | 2606 | G | 2608 | G | 2609 | G | 2610 | C | 2611 | G | 2612 | G | 2613 | cWW | |||
| 4 | HL_4V9F_055 | 4V9F | 0.1206 | 1 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |||
| 5 | HL_4IOA_052 | 4IOA | 0.0000 | 1 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |||
| 6 | HL_4WF9_049 | 4WF9 | 0.1065 | 1 | X | LSU rRNA | C | 2275 | U | 2276 | G | 2278 | G | 2279 | G | 2280 | C | 2281 | G | 2282 | G | 2283 | cWW | |||
| 7 | HL_4XEJ_210 | 4XEJ | 0.4374 | 0 | BIRE | CrPV IRES | U | 6161 | U | 6162 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | cWW | |||
| 8 | HL_4V84_034 | 4V84 | 0.4378 | 0 | AV | RNA (34-MER) | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | cWW | |||
| 9 | HL_3RKF_008 | 3RKF | 0.6336 | 0 | C | Guanine riboswitch | G | 46 | U | 47 | U | 48 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 4 |
| AUGGUUGU | 2 |
| UUAAGUGG | 1 |
| UUAGGUAG | 1 |
| GUUUCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 4 |
| UGGUUG | 2 |
| UAAGUG | 1 |
| UAGGUA | 1 |
| UUUCUA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.41 | Max 0.75
Coloring options: