Motif HL_15942.5 Version HL_15942.5 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_024 | 7A0S | 0.7584 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 2 | HL_4V9F_026 | 4V9F | 0.7517 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW | |
| 3 | HL_4WF9_025 | 4WF9 | 0.0816 | 2 | X | LSU rRNA | U | 871 | U | 873 | A | 874 | G | 876 | cWW | |
| 4 | HL_5J7L_157 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 5 | HL_7RQB_025 | 7RQB | 0.0623 | 2 | 1A | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 6 | HL_5TBW_022 | 5TBW | 0.6185 | 2 | Externally structured | 1 | LSU rRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 3 |
| UUGAGG | 1 |
| UCGAAG | 1 |
| CCUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAG | 3 |
| UGAG | 1 |
| CGAA | 1 |
| CUCA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Externally structured (1)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.06 | Avg 0.49 | Max 0.95
Coloring options: