Motif HL_16398.2 Version HL_16398.2 of this group appears in releases 3.94 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1EC6_001 | 1EC6 | 0.7690 | 6 | C | 20-MER RNA HAIRPIN | G | 4 | A | 5 | C | 6 | C | 7 | A | 9 | C | 15 | C | 16 | C | 17 | cWW | ncWWa |
| 2 | HL_8SYK_003 | 8SYK | 0.0000 | 5 | A | RNA device 43 truncation mutant 3 (U100C) | G | 57 | A | 58 | A | 59 | G | 60 | A | 61 | A | 67 | C | 68 | C | 69 | cWW | ncWWa |
| 3 | HL_3EGZ_001 | 3EGZ | 0.2885 | 5 | B | Tetracycline aptamer and artificial riboswitch | G | 12 | A | 13 | A | 14 | G | 15 | A | 16 | A | 22 | C | 23 | C | 24 | cWW | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGAAUACGACC | 2 |
| GACCUAGAUCACCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGAAUACGAC | 2 |
| ACCUAGAUCACC | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.29 | Avg 0.42 | Max 0.82
Coloring options: