Motif HL_16839.1 Version HL_16839.1 of this group appears in releases 3.12 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RDX_004 | 4RDX | 0.0000 | 4 | C | tRNA | C | 13||||4_577 | A | 14||||4_577 | G | 15||||4_577 | G | 19||||4_577 | U | 20||||4_577 | A | 21||||4_577 | G | 22||||4_577 | cWW | |
| 2 | HL_4RDX_001 | 4RDX | 0.0000 | 4 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW |
| 3 | HL_5WWT_001 | 5WWT | 0.4727 | 2 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | G | 18 | G | 19 | A | 21 | G | 22 | cWW |
| 4 | HL_3WQY_001 | 3WQY | 0.4726 | 2 | tRNA D-loop | C | tRNA | C | 1613 | A | 1614 | G | 1615 | G | 1618 | G | 1619 | A | 1621 | G | 1622 | cWW |
| 5 | HL_1GAX_004 | 1GAX | 0.4848 | 2 | tRNA D-loop | D | tRNA | C | 913 | A | 914 | G | 915 | G | 917 | G | 918 | A | 920 | G | 921 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCUGGUUAG | 2 |
| CAGGGGUAG | 1 |
| CAGCGGGAG | 1 |
| CAGCGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCUGGUUA | 2 |
| AGGGGUA | 1 |
| AGCGGGA | 1 |
| AGCGGAA | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (4)
- (1)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.23 | Avg 0.30 | Max 0.48
Coloring options: