RNA 3D Hub //

Motif HL_17210.2 Version HL_17210.2 of this group appears in releases 3.3 to 3.11

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 51-5
1 HL_4ZNP_0014ZNP0.89931AZMP/ZTP riboswitchG26G27A28A29C31cWW
2 HL_5J7L_1775J7L0.71510DA LSU rRNAC1752G1753A1754A1755G1756cWW
3 HL_4IOA_0434IOA0.70850X LSU rRNAC1743G1744C1745A1746G1747cWW
4 HL_4Y4O_1464Y4O0.698702A LSU rRNAC1752G1753C1754A1755G1756cWW
5 HL_4V9F_0464V9F0.740000 LSU rRNAC1808G1809C1810A1811G1812cWW
6 HL_4WF9_0424WF90.74300X LSU rRNAC1779G1780C1781A1782G1783cWW
7 HL_4WF9_0384WF90.16903X LSU rRNAC1656G1657C1659C1661G1663cWW
8 HL_4Y4O_1424Y4O0.129332A LSU rRNAC1612G1613C1615C1617G1619cWW
9 HL_4IOA_0394IOA0.12753X LSU rRNAC1628G1629C1631C1633G1635cWW
10 HL_4V9F_0424V9F0.000030 LSU rRNAC1687G1688C1690C1692G1694cWW
11 HL_5TBW_0415TBW0.115431 LSU rRNAC1844G1845A1847C1849G1851cWW
12 HL_4V8P_1234V8P0.11633D1 LSU rRNAC1868G1869A1871C1873G1875cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGCAG4
CGACACAG4
GGAAAC1
CGAAG1
CGCAGCAG1
CGCAUCAG1
Non-Watson-Crick part of the motif
SequenceCounts
GCA4
GACACA4
GAAA1
GAA1
GCAGCA1
GCAUCA1

Release history

Release3.33.43.53.63.73.83.93.103.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-19
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (12)
    • Basepair signature
    cWW-R-R
    Heat map statistics
    Min 0.07 | Avg 0.47 | Max 0.92
    Help

    Coloring options:

    HL_4ZNP_001:HL_4ZNP_001 = 0HL_4ZNP_001:HL_5J7L_177 = 0.6215HL_4ZNP_001:HL_4IOA_043 = 0.6317HL_4ZNP_001:HL_4Y4O_146 = 0.6384HL_4ZNP_001:HL_4V9F_046 = 0.6538HL_4ZNP_001:HL_4WF9_042 = 0.6519HL_4ZNP_001:HL_4WF9_038 = 0.879HL_4ZNP_001:HL_4Y4O_142 = 0.8869HL_4ZNP_001:HL_4IOA_039 = 0.8852HL_4ZNP_001:HL_4V9F_042 = 0.8993HL_4ZNP_001:HL_5TBW_041 = 0.9186HL_4ZNP_001:HL_4V8P_123 = 0.9146HL_5J7L_177:HL_4ZNP_001 = 0.6215HL_5J7L_177:HL_5J7L_177 = 0HL_5J7L_177:HL_4IOA_043 = 0.0941HL_5J7L_177:HL_4Y4O_146 = 0.1129HL_5J7L_177:HL_4V9F_046 = 0.1772HL_5J7L_177:HL_4WF9_042 = 0.147HL_5J7L_177:HL_4WF9_038 = 0.726HL_5J7L_177:HL_4Y4O_142 = 0.7156HL_5J7L_177:HL_4IOA_039 = 0.7096HL_5J7L_177:HL_4V9F_042 = 0.7151HL_5J7L_177:HL_5TBW_041 = 0.7408HL_5J7L_177:HL_4V8P_123 = 0.7364HL_4IOA_043:HL_4ZNP_001 = 0.6317HL_4IOA_043:HL_5J7L_177 = 0.0941HL_4IOA_043:HL_4IOA_043 = 0HL_4IOA_043:HL_4Y4O_146 = 0.0698HL_4IOA_043:HL_4V9F_046 = 0.1158HL_4IOA_043:HL_4WF9_042 = 0.13HL_4IOA_043:HL_4WF9_038 = 0.7265HL_4IOA_043:HL_4Y4O_142 = 0.7145HL_4IOA_043:HL_4IOA_039 = 0.7116HL_4IOA_043:HL_4V9F_042 = 0.7085HL_4IOA_043:HL_5TBW_041 = 0.724HL_4IOA_043:HL_4V8P_123 = 0.724HL_4Y4O_146:HL_4ZNP_001 = 0.6384HL_4Y4O_146:HL_5J7L_177 = 0.1129HL_4Y4O_146:HL_4IOA_043 = 0.0698HL_4Y4O_146:HL_4Y4O_146 = 0HL_4Y4O_146:HL_4V9F_046 = 0.1303HL_4Y4O_146:HL_4WF9_042 = 0.1526HL_4Y4O_146:HL_4WF9_038 = 0.7119HL_4Y4O_146:HL_4Y4O_142 = 0.703HL_4Y4O_146:HL_4IOA_039 = 0.7006HL_4Y4O_146:HL_4V9F_042 = 0.6987HL_4Y4O_146:HL_5TBW_041 = 0.714HL_4Y4O_146:HL_4V8P_123 = 0.7146HL_4V9F_046:HL_4ZNP_001 = 0.6538HL_4V9F_046:HL_5J7L_177 = 0.1772HL_4V9F_046:HL_4IOA_043 = 0.1158HL_4V9F_046:HL_4Y4O_146 = 0.1303HL_4V9F_046:HL_4V9F_046 = 0HL_4V9F_046:HL_4WF9_042 = 0.1503HL_4V9F_046:HL_4WF9_038 = 0.754HL_4V9F_046:HL_4Y4O_142 = 0.7428HL_4V9F_046:HL_4IOA_039 = 0.7399HL_4V9F_046:HL_4V9F_042 = 0.74HL_4V9F_046:HL_5TBW_041 = 0.7461HL_4V9F_046:HL_4V8P_123 = 0.7482HL_4WF9_042:HL_4ZNP_001 = 0.6519HL_4WF9_042:HL_5J7L_177 = 0.147HL_4WF9_042:HL_4IOA_043 = 0.13HL_4WF9_042:HL_4Y4O_146 = 0.1526HL_4WF9_042:HL_4V9F_046 = 0.1503HL_4WF9_042:HL_4WF9_042 = 0HL_4WF9_042:HL_4WF9_038 = 0.7545HL_4WF9_042:HL_4Y4O_142 = 0.7437HL_4WF9_042:HL_4IOA_039 = 0.7354HL_4WF9_042:HL_4V9F_042 = 0.743HL_4WF9_042:HL_5TBW_041 = 0.7679HL_4WF9_042:HL_4V8P_123 = 0.7659HL_4WF9_038:HL_4ZNP_001 = 0.879HL_4WF9_038:HL_5J7L_177 = 0.726HL_4WF9_038:HL_4IOA_043 = 0.7265HL_4WF9_038:HL_4Y4O_146 = 0.7119HL_4WF9_038:HL_4V9F_046 = 0.754HL_4WF9_038:HL_4WF9_042 = 0.7545HL_4WF9_038:HL_4WF9_038 = 0HL_4WF9_038:HL_4Y4O_142 = 0.1104HL_4WF9_038:HL_4IOA_039 = 0.1106HL_4WF9_038:HL_4V9F_042 = 0.169HL_4WF9_038:HL_5TBW_041 = 0.2156HL_4WF9_038:HL_4V8P_123 = 0.2229HL_4Y4O_142:HL_4ZNP_001 = 0.8869HL_4Y4O_142:HL_5J7L_177 = 0.7156HL_4Y4O_142:HL_4IOA_043 = 0.7145HL_4Y4O_142:HL_4Y4O_146 = 0.703HL_4Y4O_142:HL_4V9F_046 = 0.7428HL_4Y4O_142:HL_4WF9_042 = 0.7437HL_4Y4O_142:HL_4WF9_038 = 0.1104HL_4Y4O_142:HL_4Y4O_142 = 0HL_4Y4O_142:HL_4IOA_039 = 0.0881HL_4Y4O_142:HL_4V9F_042 = 0.1293HL_4Y4O_142:HL_5TBW_041 = 0.1926HL_4Y4O_142:HL_4V8P_123 = 0.1776HL_4IOA_039:HL_4ZNP_001 = 0.8852HL_4IOA_039:HL_5J7L_177 = 0.7096HL_4IOA_039:HL_4IOA_043 = 0.7116HL_4IOA_039:HL_4Y4O_146 = 0.7006HL_4IOA_039:HL_4V9F_046 = 0.7399HL_4IOA_039:HL_4WF9_042 = 0.7354HL_4IOA_039:HL_4WF9_038 = 0.1106HL_4IOA_039:HL_4Y4O_142 = 0.0881HL_4IOA_039:HL_4IOA_039 = 0HL_4IOA_039:HL_4V9F_042 = 0.1275HL_4IOA_039:HL_5TBW_041 = 0.1979HL_4IOA_039:HL_4V8P_123 = 0.1896HL_4V9F_042:HL_4ZNP_001 = 0.8993HL_4V9F_042:HL_5J7L_177 = 0.7151HL_4V9F_042:HL_4IOA_043 = 0.7085HL_4V9F_042:HL_4Y4O_146 = 0.6987HL_4V9F_042:HL_4V9F_046 = 0.74HL_4V9F_042:HL_4WF9_042 = 0.743HL_4V9F_042:HL_4WF9_038 = 0.169HL_4V9F_042:HL_4Y4O_142 = 0.1293HL_4V9F_042:HL_4IOA_039 = 0.1275HL_4V9F_042:HL_4V9F_042 = 0HL_4V9F_042:HL_5TBW_041 = 0.1154HL_4V9F_042:HL_4V8P_123 = 0.1163HL_5TBW_041:HL_4ZNP_001 = 0.9186HL_5TBW_041:HL_5J7L_177 = 0.7408HL_5TBW_041:HL_4IOA_043 = 0.724HL_5TBW_041:HL_4Y4O_146 = 0.714HL_5TBW_041:HL_4V9F_046 = 0.7461HL_5TBW_041:HL_4WF9_042 = 0.7679HL_5TBW_041:HL_4WF9_038 = 0.2156HL_5TBW_041:HL_4Y4O_142 = 0.1926HL_5TBW_041:HL_4IOA_039 = 0.1979HL_5TBW_041:HL_4V9F_042 = 0.1154HL_5TBW_041:HL_5TBW_041 = 0HL_5TBW_041:HL_4V8P_123 = 0.0826HL_4V8P_123:HL_4ZNP_001 = 0.9146HL_4V8P_123:HL_5J7L_177 = 0.7364HL_4V8P_123:HL_4IOA_043 = 0.724HL_4V8P_123:HL_4Y4O_146 = 0.7146HL_4V8P_123:HL_4V9F_046 = 0.7482HL_4V8P_123:HL_4WF9_042 = 0.7659HL_4V8P_123:HL_4WF9_038 = 0.2229HL_4V8P_123:HL_4Y4O_142 = 0.1776HL_4V8P_123:HL_4IOA_039 = 0.1896HL_4V8P_123:HL_4V9F_042 = 0.1163HL_4V8P_123:HL_5TBW_041 = 0.0826HL_4V8P_123:HL_4V8P_123 = 0HL_4ZNP_001HL_5J7L_177HL_4IOA_043HL_4Y4O_146HL_4V9F_046HL_4WF9_042HL_4WF9_038HL_4Y4O_142HL_4IOA_039HL_4V9F_042HL_5TBW_041HL_4V8P_123Discrepancy0.000.200.400.600.80
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