Motif HL_17210.2 Version HL_17210.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4ZNP_001 | 4ZNP | 0.8993 | 1 | A | ZMP/ZTP riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 31 | cWW |
| 2 | HL_5J7L_177 | 5J7L | 0.7151 | 0 | DA | LSU rRNA | C | 1752 | G | 1753 | A | 1754 | A | 1755 | G | 1756 | cWW |
| 3 | HL_4IOA_043 | 4IOA | 0.7085 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW |
| 4 | HL_4Y4O_146 | 4Y4O | 0.6987 | 0 | 2A | LSU rRNA | C | 1752 | G | 1753 | C | 1754 | A | 1755 | G | 1756 | cWW |
| 5 | HL_4V9F_046 | 4V9F | 0.7400 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW |
| 6 | HL_4WF9_042 | 4WF9 | 0.7430 | 0 | X | LSU rRNA | C | 1779 | G | 1780 | C | 1781 | A | 1782 | G | 1783 | cWW |
| 7 | HL_4WF9_038 | 4WF9 | 0.1690 | 3 | X | LSU rRNA | C | 1656 | G | 1657 | C | 1659 | C | 1661 | G | 1663 | cWW |
| 8 | HL_4Y4O_142 | 4Y4O | 0.1293 | 3 | 2A | LSU rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 9 | HL_4IOA_039 | 4IOA | 0.1275 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW |
| 10 | HL_4V9F_042 | 4V9F | 0.0000 | 3 | 0 | LSU rRNA | C | 1687 | G | 1688 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 11 | HL_5TBW_041 | 5TBW | 0.1154 | 3 | 1 | LSU rRNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
| 12 | HL_4V8P_123 | 4V8P | 0.1163 | 3 | D1 | LSU rRNA | C | 1868 | G | 1869 | A | 1871 | C | 1873 | G | 1875 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAG | 4 |
| CGACACAG | 4 |
| GGAAAC | 1 |
| CGAAG | 1 |
| CGCAGCAG | 1 |
| CGCAUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA | 4 |
| GACACA | 4 |
| GAAA | 1 |
| GAA | 1 |
| GCAGCA | 1 |
| GCAUCA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: