Motif HL_18156.1 Version HL_18156.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_049 | 2ZJR | 0.4548 | 3 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | U | 2017 | G | 2018 | C | 2019 | cWW | tWH |
| 2 | HL_2QBG_052 | 2QBG | 0.1422 | 3 | B | 23S rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH |
| 3 | HL_3V2F_048 | 3V2F | 0.0000 | 3 | A | 23S Ribosomal RNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH |
| 4 | HL_1S72_052 | 1S72 | 0.2439 | 3 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | G | 2075 | U | 2076 | C | 2077 | cWW | tWH |
| 5 | HL_4A1B_050 | 4A1B | 0.3473 | 3 | 1 | 26S RRNA | G | 2364 | G | 2365 | G | 2366 | G | 2370 | G | 2371 | G | 2372 | C | 2373 | cWW | tWH |
| 6 | HL_3U5H_051 | 3U5H | 0.3710 | 3 | 5 | 25S rRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAAGAUGC | 2 |
| GGGAACGGGC | 2 |
| GUAAAGAUGC | 1 |
| GUGCGGAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAGAUG | 2 |
| GGAACGGG | 2 |
| UAAAGAUG | 1 |
| UGCGGAGU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_18156.1 | Only in the parent motif |
|---|---|---|---|
| HL_02975.2 Compare | HL_2QBG_052, HL_2ZJR_049, HL_1S72_052 | HL_3U5H_051, HL_3V2F_048, HL_4A1B_050 | HL_3PYO_051, HL_3O58_051 |
Children motifs
| Child motif | Common motif instances | Only in HL_18156.1 | Only in the child motif |
|---|---|---|---|
| HL_18156.2 Compare | HL_3U5H_051, HL_3V2F_048, HL_2QBG_052, HL_4A1B_050, HL_1S72_052 | HL_2ZJR_049 | HL_4IOA_049 |
- Annotations
-
- (6)
- Basepair signature
- cWW-R-R-tWH-R
- Heat map statistics
- Min 0.11 | Avg 0.29 | Max 0.56
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