Motif HL_18156.6 Version HL_18156.6 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_051 | 1VWW | 0.2657 | 2 | 5 | 28S ribosomal RNA | G | 3873 | G | 3874 | G | 3875 | G | 3879 | G | 3880 | G | 3881 | C | 3882 | cWW | |
| 2 | HL_4A1B_050 | 4A1B | 0.1078 | 3 | 1 | 26S RRNA | G | 2364 | G | 2365 | G | 2366 | G | 2370 | G | 2371 | G | 2372 | C | 2373 | cWW | tWH |
| 3 | HL_3U5H_051 | 3U5H | 0.0000 | 3 | 5 | 25S rRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH |
| 4 | HL_1VX6_051 | 1VX6 | 0.0913 | 3 | A | 28S ribosomal RNA | G | 2662 | G | 2663 | G | 2664 | G | 2668 | G | 2669 | G | 2670 | C | 2671 | cWW | tWH |
| 5 | HL_4CUV_051 | 4CUV | 0.1115 | 3 | 1 | 25S RRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH |
| 6 | HL_1S72_052 | 1S72 | 0.3161 | 3 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | G | 2075 | U | 2076 | C | 2077 | cWW | tWH |
| 7 | HL_4QCN_048 | 4QCN | 0.3764 | 3 | A | 23S Ribosomal RNA | G | 2049 | U | 2050 | G | 2051 | A | 2055 | U | 2056 | G | 2057 | C | 2058 | cWW | tWH |
| 8 | HL_2QBG_052 | 2QBG | 0.3728 | 3 | B | 23S rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH |
| 9 | HL_1VW3_037 | 1VW3 | 0.3596 | 3 | A | 21S ribosomal RNA | G | 1927 | U | 1928 | G | 1929 | A | 1933 | U | 1934 | G | 1935 | C | 1936 | cWW | tWH |
| 10 | HL_4IOA_049 | 4IOA | 0.5708 | 3 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | U | 2017 | G | 2018 | C | 2019 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAACGGGC | 4 |
| GUGAAGAUGC | 3 |
| CUGGGGCGG | 1 |
| GUGCGGAGUC | 1 |
| GUAAAGAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAACGGG | 4 |
| UGAAGAUG | 3 |
| UGGGGCG | 1 |
| UGCGGAGU | 1 |
| UAAAGAUG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_18156.6 | Only in the parent motif |
|---|---|---|---|
| HL_18156.5 Compare | HL_4IOA_049, HL_4A1B_050, HL_4CUV_051, HL_1S72_052, HL_3U5H_051, HL_2QBG_052, HL_1VW3_037, HL_1VWW_051, HL_1VX6_051 | HL_4QCN_048 | HL_4NVV_048 |
Children motifs
| Child motif | Common motif instances | Only in HL_18156.6 | Only in the child motif |
|---|---|---|---|
| HL_18156.7 Compare | HL_4IOA_049, HL_4A1B_050, HL_4CUV_051, HL_1S72_052, HL_3U5H_051, HL_2QBG_052, HL_1VW3_037, HL_4QCN_048, HL_1VX6_051 | HL_1VWW_051 | HL_4W21_051 |
- Annotations
-
- (10)
- Basepair signature
- cWW-R-R-tWH-R
- Heat map statistics
- Min 0.09 | Avg 0.31 | Max 0.64
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