Motif HL_18943.1 Version HL_18943.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2XZM_013 | 2XZM | 0.0000 | 1 | A | SSU rRNA | C | 483 | U | 484 | U | 485 | A | 486 | G | 488 | cWW |
| 2 | HL_2QBG_002 | 2QBG | 0.9287 | 0 | A | 5S rRNA | G | 86 | U | 87 | C | 88 | U | 89 | C | 90 | cWW |
| 3 | HL_3OWZ_004 | 3OWZ | 1.0078 | 1 | B | Glycine riboswitch | G | 49 | G | 50 | A | 51 | A | 52 | C | 54 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUACG | 1 |
| GUCUC | 1 |
| GGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAC | 1 |
| UCU | 1 |
| GAAA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_18943.1 | Only in the parent motif |
|---|---|---|---|
| HL_56661.1 Compare | HL_2XZM_013 | HL_3OWZ_004, HL_2QBG_002 | |
| HL_03429.1 Compare | HL_2QBG_002 | HL_3OWZ_004, HL_2XZM_013 | HL_2QBG_005, HL_1S72_003, HL_2ZNI_004, HL_3PYO_003 |
| HL_28302.1 Compare | HL_3OWZ_004 | HL_2XZM_013, HL_2QBG_002 | HL_2XZM_007 |
Children motifs
| Child motif | Common motif instances | Only in HL_18943.1 | Only in the child motif |
|---|---|---|---|
| HL_06643.1 Compare | HL_2QBG_002 | HL_3OWZ_004, HL_2XZM_013 | HL_3RG5_001, HL_3ADD_001, HL_3AM1_001, HL_3ADC_001 |
| HL_82253.1 Compare | HL_3OWZ_004 | HL_2XZM_013, HL_2QBG_002 | HL_1WZ2_007, HL_4AQ7_002 |
| HL_05797.1 Compare | HL_2XZM_013 | HL_3OWZ_004, HL_2QBG_002 | HL_3U5F_013 |
Coloring options: