Motif HL_82253.1 Version HL_82253.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4AQ7_002 | 4AQ7 | 0.9350 | 1 | B | tRNA | G | 47|||A | C | 47|||D | C | 47|||F | cWW |
| 2 | HL_3OWZ_004 | 3OWZ | 0.0000 | 3 | B | Glycine riboswitch | G | 49 | G | 50 | C | 54 | cWW |
| 3 | HL_1WZ2_007 | 1WZ2 | 0.3553 | 3 | D | tRNA | C | 950 | G | 951 | G | 955 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGC | 1 |
| GGAAAC | 1 |
| CGUAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG | 1 |
| GAAA | 1 |
| GUAG | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_82253.1 | Only in the parent motif |
|---|---|---|---|
| HL_18943.1 Compare | HL_3OWZ_004 | HL_1WZ2_007, HL_4AQ7_002 | HL_2XZM_013, HL_2QBG_002 |
| HL_66795.1 Compare | HL_1WZ2_007 | HL_3OWZ_004, HL_4AQ7_002 | HL_2OEU_002, HL_1WZ2_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_82253.1 | Only in the child motif |
|---|---|---|---|
| HL_82253.2 Compare | HL_3OWZ_004, HL_1WZ2_007 | HL_4AQ7_002 | HL_1S72_003 |
| HL_18798.1 Compare | HL_4AQ7_002 | HL_3OWZ_004, HL_1WZ2_007 | HL_1ZBH_001, HL_4HXH_001, HL_3U5H_004 |
Coloring options: