Motif HL_19368.1 Version HL_19368.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | 3-6 | 3-7 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5X2G_002 | 5X2G | 0.9226 | 2 | B | sgRNA | G | 54 | U | 56 | U | 57 | G | 58 | C | 59 | G | 60 | G | 61 | G | 62 | C | 64 | cWW | ncSH | |||
2 | HL_5J7L_134 | 5J7L | 0.7792 | 1 | DA | LSU rRNA | U | 59 | G | 60 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | |||
3 | HL_5J8B_118 | 5J8B | 0.0000 | 0 | w | tRNA | A | 31 | PSU | 32 | U | 33 | G | 34 | A | 35 | A | 36 | MIA | 37 | A | 38 | PSU | 39 | cWW | ||||
4 | HL_1VTQ_002 | 1VTQ | 0.3915 | 0 | A | T-RNA-ASP | C | 31 | PSU | 32 | U | 33 | G | 34 | U | 35 | C | 36 | 1MG | 37 | C | 38 | G | 39 | cWW | ntSHa | |||
5 | HL_4LVW_001 | 4LVW | 0.7413 | 4 | A | THF riboswitch | A | 33 | A | 34 | U | 35 | A | 39 | U | 40 | G | 41 | U | 42 | G | 44 | U | 45 | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUUUGCGGGAC | 1 |
UGCUAAUCUG | 1 |
A(PSU)UGAA(MIA)A(PSU) | 1 |
CUGUCCG | 1 |
AAUGGGAUGUCGU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUUGCGGGA | 1 |
GCUAAUCU | 1 |
(PSU)UGAA(MIA)A | 1 |
(PSU)UGUC(1MG)C | 1 |
AUGGGAUGUCG | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.39 | Avg 0.61 | Max 0.95
Coloring options: