Motif HL_19626.1 Version HL_19626.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4NVV_008 | 4NVV | 0.7067 | 2 | A | 23S Ribosomal RNA | G | 269 | C | 270 | U | 272 | G | 273 | C | 275 | cWW | |
| 2 | HL_4CUX_004 | 4CUX | 0.3823 | 1 | 2 | 18S RRNA | C | 190 | C | 191 | U | 192 | U | 193 | G | 195 | ncWW | |
| 3 | HL_4CUV_002 | 4CUV | 0.0000 | 1 | 1 | 25S RRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 4 | HL_3U5H_002 | 3U5H | 0.1170 | 1 | 5 | 25S rRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW |
| 5 | HL_4A1B_002 | 4A1B | 0.6229 | 1 | 1 | 26S RRNA | U | 67 | A | 68 | A | 69 | C | 70 | A | 72 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACCG | 2 |
| GCUUGUC | 1 |
| CCUUUG | 1 |
| UAACUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACC | 2 |
| CUUGU | 1 |
| CUUU | 1 |
| AACU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19626.1 | Only in the parent motif |
|---|---|---|---|
| HL_81510.1 Compare | HL_3U5H_002, HL_4A1B_002 | HL_4CUV_002, HL_4CUX_004, HL_4NVV_008 | |
| HL_84258.1 Compare | HL_4NVV_008 | HL_3U5H_002, HL_4CUV_002, HL_4A1B_002, HL_4CUX_004 | HL_1S72_007, HL_1P6V_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_19626.1 | Only in the child motif |
|---|---|---|---|
| HL_19626.2 Compare | HL_3U5H_002, HL_4CUV_002, HL_4A1B_002, HL_4CUX_004, HL_4NVV_008 | HL_1VWW_002, HL_1VX6_002 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cSW-R
- Heat map statistics
- Min 0.12 | Avg 0.47 | Max 0.89
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