Motif HL_19988.1 Version HL_19988.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 6-7 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4WSM_208 | 4WSM | 0.5681 | 7 | 1K | tRNA | U | 11 | G | 12 | G | 13 | A | 14 | A | 15 | A | 23 | C | 24 | A | 25 | ncWW | ncWW | |
2 | HL_4V9I_038 | 4V9I | 0.3522 | 6 | AY | tRNA | C | 11 | G | 12 | G | 13 | A | 14 | G | 15 | A | 22 | A | 23 | G | 24 | ncWW | ||
3 | HL_7KJT_001 | 7KJT | 0.0000 | 6 | A | tRNA | U | 11 | C | 12 | A | 13 | G | 14 | U | 15 | G | 22 | A | 23 | G | 24 | ncWW | ||
4 | HL_7A0S_009 | 7A0S | 0.5625 | 4 | X | LSU rRNA | A | 254 | A | 255 | C | 256 | G | 257 | C | 258 | G | 263 | U | 264 | U | 265 | ncSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGGAAUUGGUAGACA | 1 |
CGGAGCGGCUGAAG | 1 |
UCAGUCUGGCAGAG | 1 |
AACGCUUGCGUU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGAAUUGGUAGAC | 1 |
GGAGCGGCUGAA | 1 |
CAGUCUGGCAGA | 1 |
ACGCUUGCGU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.35 | Avg 0.43 | Max 0.76
Coloring options: