Motif HL_20146.1 Version HL_20146.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_059 | 4V9F | 0.4319 | 5 | 0 | LSU rRNA | U | 2389 | U | 2390 | C | 2391 | G | 2397 | A | 2398 | G | 2399 | cWW | tSH | tHH |
| 2 | HL_4PQV_003 | 4PQV | 0.0000 | 1 | A | Flavivirus 3' UTR stem loop IV | G | 57 | G | 58 | A | 59 | G | 61 | A | 62 | C | 63 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCCAACGAG | 1 |
| GGAGGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCCAACGA | 1 |
| GAGGA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-F-F
- Heat map statistics
- Min 0.43 | Avg 0.22 | Max 0.43
Coloring options: