Motif HL_21675.1 Version HL_21675.1 of this group appears in releases 1.5 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_007 | 1S72 | 0.2912 | 2 | 0 | LSU rRNA | C | 195 | G | 196 | A | 198 | A | 199 | G | 201 | cWW | tSH |
| 2 | HL_4IOA_007 | 4IOA | 0.0000 | 1 | X | LSU rRNA | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW | |
| 3 | HL_3V2F_007 | 3V2F | 0.2251 | 1 | A | 23S Ribosomal RNA | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAAUG | 1 |
| AGAAUU | 1 |
| AGAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAAU | 1 |
| GAAU | 1 |
| GAAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_21675.1 | Only in the parent motif |
|---|---|---|---|
| HL_12811.2 Compare | HL_3V2F_007, HL_4IOA_007 | HL_1S72_007 | HL_2XZM_004, HL_3U5H_076, HL_4A1C_003 |
| HL_17468.1 Compare | HL_1S72_007 | HL_3V2F_007, HL_4IOA_007 |
Children motifs
| Child motif | Common motif instances | Only in HL_21675.1 | Only in the child motif |
|---|---|---|---|
| HL_21675.2 Compare | HL_3V2F_007, HL_1S72_007 | HL_4IOA_007 | HL_4A1B_002 |
| HL_98234.1 Compare | HL_4IOA_007 | HL_3V2F_007, HL_1S72_007 |
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