Motif HL_22629.1 Version HL_22629.1 of this group appears in releases 3.77 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 5-6 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_009 | 7A0S | 0.6021 | 3 | X | LSU rRNA | A | 254 | A | 255 | C | 256 | G | 257 | C | 258 | C | 262 | G | 263 | U | 264 | U | 265 | ncBW | ncSH | ||
| 2 | HL_7KJT_001 | 7KJT | 0.3522 | 5 | A | tRNA | U | 11 | C | 12 | A | 13 | G | 14 | U | 15 | A | 21 | G | 22 | A | 23 | G | 24 | ncWW | |||
| 3 | HL_4V9I_038 | 4V9I | 0.0000 | 5 | AY | tRNA | C | 11 | G | 12 | G | 13 | A | 14 | G | 15 | G | 21 | A | 22 | A | 23 | G | 24 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACGCUUGCGUU | 1 |
| UCAGUCUGGCAGAG | 1 |
| CGGAGCGGCUGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACGCUUGCGU | 1 |
| CAGUCUGGCAGA | 1 |
| GGAGCGGCUGAA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 |
|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.35 | Avg 0.34 | Max 0.60
Coloring options: