Motif HL_23129.1 Version HL_23129.1 of this group appears in releases 1.5 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SUX_001 | 3SUX | 0.0000 | 1 | X | A | 38 | C | 39 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | ncWW | ncWW |
| 2 | HL_4LCK_002 | 4LCK | 0.9824 | 0 | B | C | 30 | U | 31 | U | 32 | G | 33 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGGGGAGUU | 1 |
| CUUGCCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGGGGAGU | 1 |
| UUGCCAA | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_23129.1 | Only in the parent motif |
|---|---|---|---|
| HL_85753.1 Compare | HL_3SUX_001 | HL_4LCK_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_23129.1 | Only in the child motif |
|---|---|---|---|
| HL_43357.1 Compare | HL_3SUX_001 | HL_4LCK_002 | HL_2JLT_001, HL_1VW3_047, HL_3T4B_003 |
| HL_63642.1 Compare | HL_4LCK_002 | HL_3SUX_001 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
Coloring options: