Motif HL_43357.1 Version HL_43357.1 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3T4B_003 | 3T4B | 0.5587 | 0 | A | HCV IRES pseudoknot domain plus crystallization module | C | 304 | U | 305 | U | 306 | G | 307 | C | 308 | G | 309 | A | 310 | G | 311 | U | 312 | G | 313 | cWW | ncWw |
| 2 | HL_2JLT_001 | 2JLT | 0.0000 | 0 | A | R06 | G | 5 | G | 6 | U | 7 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW |
| 3 | HL_1VW3_047 | 1VW3 | 0.4506 | 0 | A | 21S ribosomal RNA | A | 2589 | U | 2590 | A | 2591 | U | 2592 | A | 2593 | A | 2594 | U | 2595 | G | 2596 | G | 2597 | U | 2598 | cWW | ncWW |
| 4 | HL_3SUX_001 | 3SUX | 0.7607 | 0 | X | THF riboswitch | A | 38 | C | 39 | G | 40 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGCGAGUG | 1 |
| GGUCCCAGAC | 1 |
| AUAUAAUGGU | 1 |
| ACGGGGAGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGCGAGU | 1 |
| GUCCCAGA | 1 |
| UAUAAUGG | 1 |
| CGGGGAGU | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_43357.1 | Only in the parent motif |
|---|---|---|---|
| HL_31318.2 Compare | HL_1VW3_047, HL_3T4B_003 | HL_2JLT_001, HL_3SUX_001 | HL_4CUX_001, HL_3U5F_001, HL_4BPP_001, HL_1FJG_001 |
| HL_23129.1 Compare | HL_3SUX_001 | HL_2JLT_001, HL_1VW3_047, HL_3T4B_003 | HL_4LCK_002 |
| HL_33223.1 Compare | HL_2JLT_001 | HL_1VW3_047, HL_3SUX_001, HL_3T4B_003 | HL_3B31_001, HL_4CUX_041 |
Children motifs
| Child motif | Common motif instances | Only in HL_43357.1 | Only in the child motif |
|---|---|---|---|
| HL_43357.2 Compare | HL_2JLT_001, HL_1VW3_047, HL_3T4B_003 | HL_3SUX_001 | HL_2A64_006 |
| HL_20199.1 Compare | HL_3SUX_001 | HL_2JLT_001, HL_1VW3_047, HL_3T4B_003 | HL_1VW3_008, HL_3D0U_002, HL_2HO7_003, HL_1VW3_057, HL_3DIR_002 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R-R-R-R-R
- Heat map statistics
- Min 0.45 | Avg 0.53 | Max 0.92
Coloring options: