Motif HL_23182.1 Version HL_23182.1 of this group appears in releases 0.3 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_013 | 1S72 | 0.4007 | 2 | 0 | G | 390 | U | 391 | U | 392 | G | 393 | G | 394 | A | 395 | U | 398 | C | 399 | cWW | cwW |
| 2 | HL_4A1B_008 | 4A1B | 0.0000 | 2 | 1 | U | 277 | U | 278 | U | 279 | G | 280 | G | 281 | G | 282 | U | 285 | G | 286 | cWW | cwW |
| 3 | HL_3U5H_008 | 3U5H | 0.1984 | 2 | 5 | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | G | 283 | U | 286 | G | 287 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUGGAUAUC | 1 |
| UUUGGGAUUG | 1 |
| UUUGGGAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGAUAU | 1 |
| UUGGGAUU | 1 |
| UUGGGAAU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_23182.1 | Only in the parent motif |
|---|---|---|---|
| HL_00194.1 Compare | HL_1S72_013 | HL_4A1B_008, HL_3U5H_008 |
Children motifs
| Child motif | Common motif instances | Only in HL_23182.1 | Only in the child motif |
|---|---|---|---|
| HL_23182.2 Compare | HL_4A1B_008, HL_3U5H_008, HL_1S72_013 | HL_4CUV_008 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-R
- Heat map statistics
- Min 0.20 | Avg 0.22 | Max 0.41
Coloring options: