Motif HL_23182.2 Version HL_23182.2 of this group appears in releases 1.15 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_013 | 1S72 | 0.9188 | 0 | 0 | LSU rRNA | G | 390 | U | 391 | U | 392 | G | 393 | G | 394 | A | 395 | U | 396 | A | 397 | U | 398 | C | 399 | cWW | cwW |
| 2 | HL_4A1B_008 | 4A1B | 0.8057 | 0 | 1 | 26S RRNA | U | 277 | U | 278 | U | 279 | G | 280 | G | 281 | G | 282 | A | 283 | U | 284 | U | 285 | G | 286 | cWW | cwW |
| 3 | HL_3U5H_008 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | G | 283 | A | 284 | A | 285 | U | 286 | G | 287 | cWW | cwW |
| 4 | HL_4CUV_008 | 4CUV | 0.1091 | 0 | 1 | 25S RRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | G | 283 | A | 284 | A | 285 | U | 286 | G | 287 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGGGAAUG | 2 |
| GUUGGAUAUC | 1 |
| UUUGGGAUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGGAAU | 2 |
| UUGGAUAU | 1 |
| UUGGGAUU | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 |
|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 |
| Status | Updated, 1 parent | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_23182.2 | Only in the parent motif |
|---|---|---|---|
| HL_23182.1 Compare | HL_4A1B_008, HL_3U5H_008, HL_1S72_013 | HL_4CUV_008 |
Children motifs
| Child motif | Common motif instances | Only in HL_23182.2 | Only in the child motif |
|---|---|---|---|
| HL_05894.1 Compare | HL_4A1B_008, HL_1S72_013 | HL_3U5H_008, HL_4CUV_008 | |
| HL_90792.1 Compare | HL_3U5H_008, HL_4CUV_008 | HL_4A1B_008, HL_1S72_013 | HL_4W21_008, HL_1VX6_008 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R-R-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.55 | Max 0.94
Coloring options: