Motif HL_23290.1 Version HL_23290.1 of this group appears in releases 0.3 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VFG_001 | 1VFG | 0.0000 | 2 | C | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | ncWW | |
| 2 | HL_3D2V_002 | 3D2V | 0.9369 | 1 | T-loop related | A | TPP riboswitch (THI element) | G | 54 | G | 55 | U | 56 | A | 57 | A | 58 | U | 59 | C | 61 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUCGAUUC | 1 |
| GGUAAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCGAUU | 1 |
| GUAAUG | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_23290.1 | Only in the parent motif |
|---|---|---|---|
| HL_78735.2 Compare | HL_3D2V_002 | HL_1VFG_001 | HL_2GDI_002, HL_1U9S_003, HL_2GDI_004, HL_2HOJ_002, HL_3NPB_003, HL_3D2V_004, HL_2XZM_008, HL_1FJG_006, HL_2AW7_006, HL_3O30_007, HL_3Q1Q_005 |
| HL_80822.1 Compare | HL_1VFG_001 | HL_3D2V_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_23290.1 | Only in the child motif |
|---|---|---|---|
| HL_23290.2 Compare | HL_1VFG_001, HL_3D2V_002 | HL_4R0D_010 |
- Annotations
-
- (1)
- T-loop related (1)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: