Motif HL_23481.2 Version HL_23481.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6	4-5
1	HL_3DIL_003	3DIL	0.7992	0	GNRA	A	RNA (174-MER)	G	124	G	125	A	126	A	127	U	128	A	129	C	130	cWW	tSH	ncSW
2	HL_4WF9_006	4WF9	0.0912	1		X	LSU rRNA	G	197	A	198	A	200	C	201	A	202	U	203	C	204	cWW	tSH
3	HL_5J7L_139	5J7L	0.0659	1		DA	LSU rRNA	G	194	A	195	A	197	C	198	A	199	U	200	C	201	cWW	ntSH
4	HL_4Y4O_108	4Y4O	0.0000	1		2A	LSU rRNA	G	194	A	195	A	197	C	198	A	199	U	200	C	201	cWW	ntSH
5	HL_4IOA_006	4IOA	0.0678	1		X	LSU rRNA	G	171	A	172	A	174	C	175	A	176	U	177	C	178	cWW	ntSH
6	HL_4V9F_006	4V9F	0.0942	1		0	LSU rRNA	G	164	A	165	A	167	C	168	A	169	U	170	C	171	cWW	tSH
7	HL_5TBW_001	5TBW	0.1704	1		1	LSU rRNA	U	38	A	39	G	41	C	42	A	43	U	44	A	45	cWW	ntSH
8	HL_4V8P_084	4V8P	0.2278	1		D1	LSU rRNA	U	36	A	37	G	39	C	40	A	41	U	42	A	43	cWW	ntSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAUC	5
UAAGCAUA	2
GGAAUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACAU	5
AAGCAU	2
GAAUA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
GNRA (1)
Basepair signature: cWW-tSH-R-R-R
Heat map statistics: Min 0.07 | Avg 0.28 | Max 0.84

Help

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view

reading 727 atoms

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727 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 42 ms

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Coloring options: Nucleotide numbers

Motif HL_23481.2 Version HL_23481.2 of this group appears in releases 3.3 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_23481.2 Version HL_23481.2 of this group appears in releases 3.3 to 3.11

Download

Csv

Json