Motif HL_23914.1 Version HL_23914.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_034 | 8C3A | 0.7237 | 3 | 1 | LSU rRNA | G | 1562 | A | 1563 | U | 1564 | U | 1568 | C | 1569 | cWW | ||
| 2 | HL_8C3A_196 | 8C3A | 0.5358 | 1 | CM | SSU rRNA | C | 228 | U | 229 | C | 231 | G | 232 | G | 233 | cWW | tSWa | |
| 3 | HL_3V7E_002 | 3V7E | 0.4250 | 1 | UNCG variation | C | SAM-I riboswitch | C | 65 | U | 66 | C | 68 | G | 69 | G | 70 | cWW | |
| 4 | HL_6CZR_082 | 6CZR | 0.2833 | 1 | 1a | SSU rRNA | C | 415 | U | 416 | C | 418 | G | 419 | G | 420 | cWW | tSW | |
| 5 | HL_7D81_001 | 7D81 | 0.2640 | 1 | A | nadA RNA | C | 26 | G | 27 | A | 29 | A | 30 | G | 31 | cWW | ||
| 6 | HL_8SP9_003 | 8SP9 | 0.0000 | 1 | C | tRNA scaffold,CVB3 Cloverleaf RNA | U | 90 | C | 91 | C | 93 | G | 94 | G | 95 | cWW | tSWa | |
| 7 | HL_5J7L_005 | 5J7L | 0.2988 | 1 | UNCG | AA | SSU rRNA | C | 207 | U | 208 | C | 210 | G | 211 | G | 212 | cWW | ntSW |
| 8 | HL_7MLW_002 | 7MLW | 0.2949 | 1 | F | Guanidine-I riboswitch | G | 80 | U | 81 | C | 83 | G | 84 | C | 85 | ncWW | tSWa | |
| 9 | HL_5F5H_002 | 5F5H | 0.4152 | 3 | D | RNA (21-mer) | C | 8 | G | 9 | U | 10 | A | 14 | G | 15 | cWW | tsS | |
| 10 | HL_5F5H_001 | 5F5H | 0.4106 | 3 | C | RNA (21-mer) | C | 8 | G | 9 | U | 10 | A | 14 | G | 15 | cWW | tsS | |
| 11 | HL_5F5F_003 | 5F5F | 0.4285 | 3 | F | RNA (20-mer) | C | 7 | G | 8 | U | 9 | A | 13 | G | 14 | cWW | tsS | |
| 12 | HL_5F5F_001 | 5F5F | 0.4248 | 3 | B | RNA (20-mer) | C | 7 | G | 8 | U | 9 | A | 13 | G | 14 | cWW | tsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCGG | 4 |
| CGUUCUAG | 2 |
| CGUUUUAG | 2 |
| GAUUUUUC | 1 |
| CGAAAG | 1 |
| UCACGG | 1 |
| GUUCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 5 |
| GUUCUA | 2 |
| GUUUUA | 2 |
| AUUUUU | 1 |
| GAAA | 1 |
| CACG | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- UNCG variation (1)
- UNCG (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.04 | Avg 0.44 | Max 0.89
Coloring options: