Motif HL_24068.1 Version HL_24068.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5H9F_001 | 5H9F | 0.6189 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW | |||
| 2 | HL_7RGU_003 | 7RGU | 0.2555 | 1 | F | Modified SL3 of RocR | U | 9 | C | 10 | U | 11 | C | 13 | G | 14 | G | 15 | A | 16 | cWW | ncWW | tSW | |
| 3 | HL_5TBW_021 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW | |
| 4 | HL_6CF2_001 | 6CF2 | 0.2420 | 1 | G | RNA (35-MER) | A | 13 | C | 14 | U | 15 | C | 17 | G | 18 | G | 19 | U | 20 | cWW | |||
| 5 | HL_6ZDP_001 | 6ZDP | 0.8502 | 5 | B | Chains: B | C | 1302 | C | 1303 | U | 1304 | A | 1306 | U | 1311 | G | 1312 | G | 1313 | cWW | ncWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGCCAGC | 1 |
| UCUUCGGA | 1 |
| GCGAAAGAC | 1 |
| ACUUCGGU | 1 |
| CCUAAUUAGUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUCGG | 2 |
| CGCCAG | 1 |
| CGAAAGA | 1 |
| CUAAUUAGUG | 1 |
- Annotations
- Basepair signature
- cWW-cWW-F-F-F
- Heat map statistics
- Min 0.24 | Avg 0.44 | Max 0.92
Coloring options: