Motif HL_24473.3 Version HL_24473.3 of this group appears in releases 0.3 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5		6		7		8		9		10		11		12		13	1-13	2-12	3-11	4-10
1	HL_1WZ2_005	1WZ2	0.0000	2	tRNA D-loop	D	C	912	G	913	A	914	G	915	C	916	C	917	U	918	G	920	U	921	C	922	A	924	A	925	G	926	cWW	tSH	cWS	tSW
2	HL_2ZZM_001	2ZZM	0.5985	2	tRNA D-loop	B	C	12	A	13	A	14	G	15	C	16	C	17	U	17\|\|\|A	G	19	C	20	C	20\|\|\|A	A	21	A	22	G	23	cWW	tSH	cWS	tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAGCCUGGUCAAAG	1
CAAGCCUGGCCAAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAGCCUGGUCAAA	1
AAGCCUGGCCAAA	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15	1.16	1.17	1.18
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-06	2013-05-04	2013-06-01	2013-07-03	2013-08-03	2013-08-31	2013-09-28	2013-11-04	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27	2014-06-15	2014-07-26	2014-09-06	2014-10-09
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_24473.3	Only in the parent motif
HL_24473.2 Compare	HL_1WZ2_005, HL_2ZZM_001		HL_1WZ2_001

Children motifs

This motif has no children motifs.

Annotations: tRNA D-loop (2)
Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R
Heat map statistics: Min 0.60 | Avg 0.30 | Max 0.60

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Coloring options: Nucleotide numbers

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