Motif HL_24544.1 Version HL_24544.1 of this group appears in releases 0.3 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_036 | 4A1B | 0.8635 | 1 | 1 | 26S RRNA | G | 1704 | U | 1705 | U | 1706 | A | 1707 | U | 1708 | C | 1709 | U | 1710 | U | 1712 | cWW | |
| 2 | HL_3U5H_037 | 3U5H | 0.8376 | 1 | 5 | 25S rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | |
| 3 | HL_2XZM_033 | 2XZM | 0.7881 | 1 | A | 18S RRNA | G | 1566 | U | 1567 | C | 1568 | A | 1569 | U | 1570 | C | 1571 | A | 1572 | C | 1574 | cWW | |
| 4 | HL_3U5F_035 | 3U5F | 0.8890 | 1 | 6 | 18S rRNA | G | 1594 | U | 1595 | C | 1596 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW |
| 5 | HL_3V2F_033 | 3V2F | 0.1218 | 2 | A | 23S Ribosomal RNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH |
| 6 | HL_1S72_037 | 1S72 | 0.0695 | 2 | 0 | LSU rRNA | G | 1498 | U | 1499 | U | 1500 | A | 1501 | A | 1502 | U | 1503 | A | 1504 | C | 1507 | cWW | tWH |
| 7 | HL_4A1B_034 | 4A1B | 0.0000 | 2 | 1 | 26S RRNA | G | 1624 | U | 1625 | U | 1626 | A | 1627 | A | 1628 | U | 1629 | A | 1630 | C | 1633 | cWW | tWH |
| 8 | HL_2QBG_037 | 2QBG | 0.1078 | 2 | B | 23S rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUAUUC | 4 |
| GUUAUCUUU | 2 |
| GUCAUCAGC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUAUU | 4 |
| UUAUCUU | 2 |
| UCAUCAG | 2 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_24544.1 | Only in the parent motif |
|---|---|---|---|
| HL_20766.1 Compare | HL_1S72_037, HL_2QBG_037 | HL_3U5F_035, HL_2XZM_033, HL_3U5H_037, HL_4A1B_034, HL_4A1B_036, HL_3V2F_033 | HL_3O58_035, HL_3PYO_035 |
| HL_03576.1 Compare | HL_2XZM_033 | HL_1S72_037, HL_2QBG_037, HL_3U5F_035, HL_3U5H_037, HL_4A1B_034, HL_4A1B_036, HL_3V2F_033 | HL_1L2X_001, HL_2A43_001, HL_1FJG_014, HL_2AW7_014 |
Children motifs
| Child motif | Common motif instances | Only in HL_24544.1 | Only in the child motif |
|---|---|---|---|
| HL_24544.2 Compare | HL_1S72_037, HL_2QBG_037, HL_3U5F_035, HL_3U5H_037, HL_4A1B_034, HL_4A1B_036, HL_3V2F_033 | HL_2XZM_033 | HL_4BPP_034 |
- Annotations
-
- (8)
- Basepair signature
- cWW-tWH-R-tSH-R
- Heat map statistics
- Min 0.07 | Avg 0.57 | Max 0.93
Coloring options: