#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 9 10 111-11
1 HL_5DDO_0045DDO0.00001U1 small nuclear ribonucleoprotein A binding hairpinBL-glutamine riboswitch (58-MER)C34A35U36U37G38C39A40C41U42C43G45cWW
2 HL_6F4H_0026F4H1.03541U1 small nuclear ribonucleoprotein A binding hairpinDU1-SL2C6A7U8U9G10C11A12C13C14U15G17cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAUUGCACUCCG1
CAUUGCACCUCG1
Non-Watson-Crick part of the motif
SequenceCounts
AUUGCACUCC1
AUUGCACCUC1

Release history

Release3.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • U1 small nuclear ribonucleoprotein A binding hairpin (2)
  • Basepair signature
    cWW-R-R-R-R-R-R-R-R
    Heat map statistics
    Min 1.04 | Avg 0.52 | Max 1.04
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.3545 s