Motif HL_26055.6 Version HL_26055.6 of this group appears in releases 3.58 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_063 | 5TBW | 0.8811 | 0 | 1 | LSU rRNA | U | 2920 | U | 2921 | G | 2922 | U | 2923 | U | 2924 | C | 2925 | A | 2926 | cWW | |||
| 2 | HL_4WF9_058 | 4WF9 | 0.8306 | 0 | X | LSU rRNA | C | 2578 | U | 2579 | G | 2580 | U | 2581 | U | 2582 | C | 2583 | G | 2584 | cWW | |||
| 3 | HL_7A0S_061 | 7A0S | 0.8165 | 0 | X | LSU rRNA | C | 2530 | U | 2531 | G | 2532 | U | 2533 | U | 2534 | C | 2535 | G | 2536 | cWW | |||
| 4 | HL_4LFB_002 | 4LFB | 0.6298 | 0 | A | SSU rRNA | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | |||
| 5 | HL_3LA5_002 | 3LA5 | 0.1849 | 1 | Purine riboswitch | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 6 | HL_4LX6_002 | 4LX6 | 0.1287 | 1 | Purine riboswitch | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 7 | HL_4XNR_002 | 4XNR | 0.0658 | 1 | Purine riboswitch | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 8 | HL_1Y26_002 | 1Y26 | 0.0614 | 1 | Purine riboswitch | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 9 | HL_1Y27_002 | 1Y27 | 0.0548 | 1 | Purine riboswitch | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ||
| 10 | HL_4FEN_002 | 4FEN | 0.0000 | 1 | Purine riboswitch | B | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 11 | HL_3AL0_002 | 3AL0 | 0.4661 | 2 | E | tRNA | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | cWW | ||
| 12 | HL_5J7L_014 | 5J7L | 0.6739 | 0 | GNRA-like with tWH | AA | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 13 | HL_4LFB_014 | 4LFB | 0.6445 | 0 | GNRA-like with tWH | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH | |
| 14 | HL_6CZR_085 | 6CZR | 0.6617 | 0 | 1a | SSU rRNA | G | 601 | C | 602 | U | 603 | C | 604 | A | 605 | A | 606 | C | 607 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 4 |
| GCUCAAC | 3 |
| CUGUUCG | 2 |
| GCUUCCAC | 2 |
| UUGUUCA | 1 |
| GUUUUAC | 1 |
| ACUCUGGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 4 |
| UGUUC | 3 |
| CUCAA | 3 |
| CUUCCA | 2 |
| UUUUA | 1 |
| CUCUGGA | 1 |
Release history
| Release | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Purine riboswitch (6)
- (6)
- GNRA-like with tWH (2)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.05 | Avg 0.54 | Max 0.93
Coloring options: