Motif HL_31541.1 Version HL_31541.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1WZ2_006 | 1WZ2 | 0.0000 | 2 | Pseudoknot geometry | D | A | 934 | C | 937 | A | 938 | A | 939 | G | 940 | A | 941 | U | 942 | cWW |
| 2 | HL_2ZJR_013 | 2ZJR | 0.3339 | 1 | X | G | 423 | A | 425 | C | 426 | C | 427 | A | 428 | C | 429 | C | 430 | cWW | |
| 3 | HL_2QBG_015 | 2QBG | 0.6310 | 1 | B | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | U | 416 | C | 417 | cWW | |
| 4 | HL_3PYO_014 | 3PYO | 0.6868 | 1 | A | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | C | 416 | C | 417 | cWW | |
| 5 | HL_1WZ2_002 | 1WZ2 | 0.6654 | 2 | C | A | 934 | C | 937 | A | 938 | A | 939 | G | 940 | A | 941 | U | 942 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCAAGAU | 2 |
| GGACCACC | 2 |
| GGACCAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAAGA | 2 |
| GACCAC | 2 |
| GACCAU | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_31541.1 | Only in the parent motif |
|---|---|---|---|
| HL_26175.1 Compare | HL_2QBG_015, HL_3PYO_014, HL_2ZJR_013, HL_1WZ2_002 | HL_1WZ2_006 | HL_2NR0_012, HL_1U6B_002, HL_1S72_053 |
| HL_30376.1 Compare | HL_1WZ2_006 | HL_2QBG_015, HL_3PYO_014, HL_2ZJR_013, HL_1WZ2_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_31541.1 | Only in the child motif |
|---|---|---|---|
| HL_17723.1 Compare | HL_2QBG_015, HL_1WZ2_006, HL_2ZJR_013 | HL_3PYO_014, HL_1WZ2_002 | HL_3V2F_014, HL_3NPB_001, HL_4AOB_001, HL_3IVK_009, HL_3V7E_004, HL_3GX5_001 |
- Annotations
-
- (4)
- Pseudoknot geometry (1)
- Basepair signature
- Heat map statistics
- Min 0.15 | Avg 0.38 | Max 0.69
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