Motif HL_26777.1 Version HL_26777.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5X2G_003 | 5X2G | 0.6456 | 1 | B | sgRNA | G | 73 | U | 74 | U | 75 | A | 76 | C | 77 | A | 78 | A | 79 | C | 81 | cWW | tWH | |
| 2 | HL_7MLW_003 | 7MLW | 0.0000 | 1 | F | Guanidine-I riboswitch | G | 112 | A | 113 | U | 114 | A | 115 | A | 116 | A | 117 | A | 118 | C | 120 | cWW | tWH | tWH |
| 3 | HL_6DLR_003 | 6DLR | 0.0846 | 1 | A | Guanidine-I riboswitch | G | 82 | A | 83 | U | 84 | A | 85 | G | 86 | A | 87 | A | 88 | C | 90 | cWW | tWH | tWH |
| 4 | HL_5T83_003 | 5T83 | 0.0981 | 1 | A | Guanidine-I riboswitch | G | 77 | A | 78 | U | 79 | A | 80 | A | 81 | A | 82 | A | 83 | C | 85 | cWW | ntWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAAAGC | 2 |
| GUUACAAUC | 1 |
| GAUAGAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAAAG | 2 |
| UUACAAU | 1 |
| AUAGAAG | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tWH-tWH-F-F
- Heat map statistics
- Min 0.08 | Avg 0.29 | Max 0.69
Coloring options: