Motif HL_27353.1 Version HL_27353.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4AQ7_002 | 4AQ7 | 0.9702 | 1 | B | tRNA | G | 47|||A | C | 47|||D | C | 47|||F | cWW | |
| 2 | HL_3U5H_004 | 3U5H | 0.7880 | 2 | 5 | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW | |
| 3 | HL_4CUV_004 | 4CUV | 0.5429 | 2 | 1 | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW | |
| 4 | HL_1ZBH_001 | 1ZBH | 0.3067 | 3 | Mini UNCG | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW |
| 5 | HL_4QIL_002 | 4QIL | 0.0993 | 2 | Mini UNCG | C | RNA (19-mer) | C | 8 | G | 10 | G | 12 | cWW |
| 6 | HL_4QI2_001 | 4QI2 | 0.0000 | 2 | E | RNA (23-mer) | C | 10 | G | 12 | G | 14 | cWW | |
| 7 | HL_4TUX_001 | 4TUX | 0.2922 | 3 | C | RNA (26-MER) | U | 13 | U | 16 | A | 18 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCG | 2 |
| UUUUCA | 2 |
| CUGUG | 2 |
| GCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUC | 2 |
| UUUC | 2 |
| UGU | 2 |
| CG | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_27353.1 | Only in the parent motif |
|---|---|---|---|
| HL_25878.1 Compare | HL_3U5H_004, HL_4CUV_004 | HL_4QI2_001, HL_4QIL_002, HL_4TUX_001, HL_4AQ7_002, HL_1ZBH_001 | HL_1FJG_018, HL_4P9R_001, HL_3U5H_069 |
| HL_65386.1 Compare | HL_4AQ7_002 | HL_4QIL_002, HL_4TUX_001, HL_4QI2_001, HL_1ZBH_001, HL_4CUV_004, HL_3U5H_004 | HL_4CUV_078 |
| HL_64209.1 Compare | HL_1ZBH_001 | HL_4QIL_002, HL_4TUX_001, HL_4QI2_001, HL_4AQ7_002, HL_4CUV_004, HL_3U5H_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_27353.1 | Only in the child motif |
|---|---|---|---|
| HL_27353.2 Compare | HL_4QIL_002, HL_4QI2_001, HL_1ZBH_001, HL_4AQ7_002, HL_4CUV_004, HL_3U5H_004 | HL_4TUX_001 | HL_4TV0_001 |
- Annotations
-
- (5)
- Mini UNCG (2)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.10 | Avg 0.53 | Max 1.06
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