Motif HL_29414.1 Version HL_29414.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7RQB_001 | 7RQB | 0.2375 | 0 | Pseudoknot with intercalation (H) | 1A | U | 59 | G | 60 | G | 61 | C | 62 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | ||
| 2 | HL_7A0S_001 | 7A0S | 0.0000 | 0 | Pseudoknot with intercalation | X | C | 58 | G | 59 | A | 60 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | cSH | ||
| 3 | HL_5J7L_134 | 5J7L | 0.7350 | 0 | DA | U | 59 | G | 60 | C | 61 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | |||
| 4 | HL_2JLT_001 | 2JLT | 0.7358 | 0 | A | G | 5 | G | 6 | U | 7 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW | |||
| 5 | HL_6VMY_005 | 6VMY | 0.8950 | 0 | A | U | 333 | C | 334 | U | 335 | G | 336 | C | 337 | G | 338 | A | 339 | G | 340 | G | 341 | A | 342 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGCUACCUG | 1 |
| CGAUUACCUG | 1 |
| UGCUAAUCUG | 1 |
| GGUCCCAGAC | 1 |
| UCUGCGAGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCUACCU | 1 |
| GAUUACCU | 1 |
| GCUAAUCU | 1 |
| GUCCCAGA | 1 |
| CUGCGAGG | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Pseudoknot with intercalation (1)
- Pseudoknot with intercalation (H) (1)
- Basepair signature
- cWW-R-R-cSH-R-R-R
- Heat map statistics
- Min 0.24 | Avg 0.58 | Max 0.97
Coloring options: