Motif HL_29892.1 Version HL_29892.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX6_031 | 1VX6 | 0.0000 | 2 | A | 28S ribosomal RNA | C | 1654 | U | 1655 | U | 1657 | G | 1658 | A | 1659 | U | 1661 | G | 1662 | cWW | cwW |
| 2 | HL_1VX2_006 | 1VX2 | 0.9115 | 1 | 2 | 18S ribosomal RNA | C | 322 | C | 323 | C | 325 | C | 326 | G | 327 | U | 328 | G | 329 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUGAUUG | 1 |
| CCCCCGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUGAUU | 1 |
| CCCCGU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_29892.1 | Only in the child motif |
|---|---|---|---|
| HL_08494.1 Compare | HL_1VX6_031 | HL_1VX2_006 | HL_3QSY_002 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.91 | Avg 0.46 | Max 0.91
Coloring options: