Motif HL_30445.1 Version HL_30445.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 3-9 | 4-7 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_6CZR_101 | 6CZR | 0.1939 | 2 | 1a | SSU rRNA | G | 1338 | A | 1339 | U | 1340 | C | 1341 | A | 1342 | G | 1343 | C | 1344 | A | 1346 | G | 1348 | C | 1349 | cWW | tWW | |||
2 | HL_4LFB_030 | 4LFB | 0.0000 | 2 | A | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | C | 1361|||A | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | tWW | ||
3 | HL_5J7L_029 | 5J7L | 0.1471 | 1 | AA | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | ntWH | ||
4 | HL_4WSM_251 | 4WSM | 0.8244 | 0 | 1K | tRNA | C | 47 | C | 48 | C | 49 | A | 50 | A | 51 | U | 52 | A | 53 | G | 54 | G | 55 | G | 56 | ncWW | ncWW | ntSH | ||
5 | HL_4V7M_039 | 4V7M | 0.7277 | 1 | AY | tRNA | G | 29 | A | 30 | U | 31 | U | 32 | G | 33 | U | 34 | G | 35 | U | 37 | U | 38 | C | 39 | ncWW | ncWH | ncwW | ||
6 | HL_4WT8_246 | 4WT8 | 0.8654 | 1 | C3 | tRNA | G | 30 | A | 31 | U | 32 | U | 33 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | C | 40 | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUCAGCCAUGC | 2 |
GAUCAGAAUGC | 1 |
CCCAAUAGGG | 1 |
GAUUGUGAUUC | 1 |
GAUUGAAAAUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUCAGCCAUG | 2 |
AUCAGAAUG | 1 |
CCAAUAGG | 1 |
AUUGUGAUU | 1 |
AUUGAAAAU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.15 | Avg 0.55 | Max 0.98
Coloring options: