Motif HL_31196.1 Version HL_31196.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6VMY_005 | 6VMY | 0.5699 | 1 | A | Cobalamin riboswitch | U | 333 | C | 334 | G | 336 | C | 337 | G | 338 | A | 339 | G | 340 | G | 341 | A | 342 | cWW | |
| 2 | HL_2JLT_001 | 2JLT | 0.5336 | 1 | A | R06 | G | 5 | G | 6 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW |
| 3 | HL_3SUX_001 | 3SUX | 0.4580 | 1 | X | THF riboswitch | A | 38 | C | 39 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | ncWW | ncWW |
| 4 | HL_7JRT_001 | 7JRT | 0.0000 | 2 | A | RNA nano bracelet | G | 35 | A | 36 | C | 39 | U | 40 | C | 41 | G | 42 | C | 43 | A | 44 | C | 45 | cWW | cwW |
| 5 | HL_7JRT_002 | 7JRT | 0.2781 | 2 | A | RNA nano bracelet | G | 102 | A | 103 | C | 106 | C | 107 | U | 108 | C | 109 | C | 110 | A | 111 | C | 112 | cWW | ncBW |
| 6 | HL_7JRS_002 | 7JRS | 0.4624 | 2 | B | RNA 3D nanocage | G | 63 | A | 64 | C | 67 | A | 68 | G | 69 | G | 70 | C | 71 | A | 72 | C | 73 | cWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUGCGAGGA | 1 |
| GGUCCCAGAC | 1 |
| ACGGGGAGUU | 1 |
| GAAGCUCGCAC | 1 |
| GAAGCCUCCAC | 1 |
| GAAGCAGGCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGCGAGG | 1 |
| GUCCCAGA | 1 |
| CGGGGAGU | 1 |
| AAGCUCGCA | 1 |
| AAGCCUCCA | 1 |
| AAGCAGGCA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.28 | Avg 0.43 | Max 0.78
Coloring options: