Motif HL_31581.3 Version HL_31581.3 of this group appears in releases 3.27 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6LAX_001 | 6LAX | 0.1102 | 4 | U1 small nuclear ribonucleoprotein A binding hairpin | A | SAM-VI (S-adenosyl methionine) riboswitch aptamer | C | 15 | A | 16 | U | 17 | U | 18 | G | 19 | A | 21 | C | 22 | G | 26 | cWW |
| 2 | HL_4PRF_002 | 4PRF | 0.0000 | 4 | B | Hepatitis Delta virus ribozyme | C | 147 | A | 148 | U | 149 | U | 150 | G | 151 | A | 153 | C | 154 | G | 158 | cWW | |
| 3 | HL_4PR6_002 | 4PR6 | 0.0578 | 4 | B | HDV RIBOZYME SELF-CLEAVED | C | 147 | A | 148 | U | 149 | U | 150 | G | 151 | A | 153 | C | 154 | G | 158 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUGCACUCCG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGCACUCC | 3 |
Release history
| Release | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- U1 small nuclear ribonucleoprotein A binding hairpin (1)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.06 | Avg 0.06 | Max 0.12
Coloring options: