#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 51-53-4
1 HL_3ADD_0013ADD0.34511tRNA D-loopCG15U16G19U20C20|||AcWWcSH
2 HL_3AM1_0013AM10.00001tRNA D-loopBU18U19G21U22A23cWWcSH
3 HL_3AM1_0053AM10.00001tRNA D-loopBU18||||5_555U19||||5_555G21||||5_555U22||||5_555A23||||5_555cWWcSH
4 HL_3W3S_0053W3S0.18641tRNA D-loopBC15||||43_455U16||||43_455G19||||43_455U20||||43_455G20|||A|43_455cWWcSH
5 HL_3W3S_0013W3S0.18641tRNA D-loopBC15U16G19U20G20|||AcWWcSH
6 HL_4ZDO_0014ZDO0.30081tRNA D-loopEG15||AU16||AG19||AU20||AC20||A|AcWWcSH
7 HL_3RG5_0093RG50.30391tRNA D-loopBG15||||1_556U16||||1_556G19||||1_556U20||||1_556C20|||A|1_556cWWcSH
8 HL_3RG5_0053RG50.30391tRNA D-loopBG15U16G19U20C20|||AcWWcSH
9 HL_5F9R_0045F9R0.48950D-loop relatedAG105A106G107U108C109cWWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
GUGGUC4
UUGGUA2
CUGGUG2
GAGUC1
Non-Watson-Crick part of the motif
SequenceCounts
UGGU8
AGU1

Release history

Release3.33.43.53.63.73.83.93.103.23.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.61
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-09-262018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-17
StatusExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA D-loop (8)
  • D-loop related (1)
  • Basepair signature
    cWW-cSH
    Heat map statistics
    Min 0.19 | Avg 0.28 | Max 0.55
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