#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6 71-72-6
1 HL_1S72_0081S720.272100 LSU rRNAC217C218G219C220G221A222G223cWWtSH
2 HL_4A1B_0034A1B0.126101 LSU rRNAU88G89G90C91G92A93A94cWWtSH
3 HL_3U5H_0033U5H0.097705 LSU rRNAC90G91G92C93G94A95G96cWWtSH
4 HL_3V2F_0083V2F0.00000A LSU rRNAC246G247G248C249G250A251G252cWWtSH
5 HL_2QBG_0102QBG0.11170B LSU rRNAC246G247G248C249G250A251G252cWWntSH
6 HL_2ZJR_0082ZJR0.16180X LSU rRNAC223G224G225C226G227A228G229cWWntSH
7 HL_3U5F_0323U5F0.676406 SSU rRNAU1396U1397U1398C1399A1400A1401G1402cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
CGGCGAG4
CCGCGAG1
UGGCGAA1
UUUCAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GGCGA5
CGCGA1
UUCAA1

Release history

Release0.30.40.50.60.70.81.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in HL_33402.1Only in the parent motif
HL_69082.1
Compare
HL_2ZJR_008, HL_2QBG_010, HL_1S72_008HL_3U5H_003, HL_4A1B_003, HL_3V2F_008, HL_3U5F_032HL_2OIU_002, HL_2OIU_003, HL_2OIU_001, HL_2OIU_006, HL_2OIU_004, HL_2OIU_005, HL_2XZM_005, HL_1M5O_004, HL_1M5O_002, HL_3O58_010, HL_3O58_016, HL_2ZJR_019, HL_2ZJR_014, HL_2ZJR_015, HL_3PYO_063, HL_2XXA_002, HL_3MUR_001, HL_3PYO_064, HL_2XXA_001, HL_1S72_054, HL_2GIS_002, HL_2GIS_003, HL_2XZM_031, HL_3PYO_017, HL_1FJG_028, HL_2ZJR_069, HL_3O58_003, HL_1KXK_001, HL_1HMH_001, HL_1HMH_003, HL_1HMH_002, HL_2QBG_021, HL_3PYO_016, HL_1S72_040, HL_2EZ6_001, HL_3KTW_002, HL_2QBG_028, HL_1S72_048, HL_2ZJR_067, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_1FJG_024, HL_2BTE_003, HL_1Q96_002, HL_1Q96_003, HL_2BTE_007, HL_1MFQ_001, HL_1MFQ_002, HL_2XZM_023, HL_2XZM_020, HL_1UN6_002, HL_3PYO_069, HL_1U9S_004, HL_3O58_030, HL_3O58_033, HL_2QBG_036, HL_1S72_033, HL_2QBG_033, HL_3PYO_008, HL_1S72_070, HL_1FJG_032, HL_2QBG_066, HL_1S72_017, HL_3MOJ_001, HL_2EZ6_002, HL_2AW7_003, HL_2AW7_004, HL_2XZM_015, HL_2AW7_007, HL_2ZZM_003, HL_3G78_006, HL_3PYO_031, HL_3PYO_034, HL_2AW7_010, HL_1S72_020, HL_1S72_023, HL_2ZJR_047, HL_3IWN_001, HL_3E5C_001, HL_2AW7_016, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_2QBG_049, HL_1Q96_001, HL_2QBG_016, HL_2AW7_032, HL_488D_001, HL_3A3A_003, HL_488D_002, HL_3O30_032, HL_2XZM_027, HL_3ADC_003, HL_1JID_001, HL_1S72_015, HL_3PYO_020, HL_3O58_074, HL_1FJG_019, HL_2ZJR_056, HL_2HO7_004, HL_3PYO_015, HL_1FJG_010, HL_1UN6_004, HL_1FJG_016, HL_1LNG_002, HL_3PYO_046, HL_2AW7_022, HL_1Y0Q_007, HL_1Y0Q_004, HL_1Y0Q_003, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3O30_024, HL_3O30_025, HL_1GID_004, HL_3O58_048, HL_3O30_021, HL_2NZ4_008, HL_2NZ4_004, HL_3O30_028, HL_1U6B_001, HL_3AM1_003, HL_2PXV_001, HL_1S72_009, HL_3PYO_058, HL_3NPB_002, HL_3NKB_002, HL_3DVZ_001, HL_2QBG_065, HL_3Q1Q_008, HL_2QBG_060, HL_3Q1Q_003, HL_3Q1Q_001, HL_1X8W_001, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_3P22_001, HL_3P22_003, HL_3P22_005, HL_3P22_007, HL_2NZ4_016, HL_2NZ4_012, HL_1S72_065, HL_1S72_066, HL_2ZJR_062, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_1X8W_005, HL_1G1X_001, HL_2ZJR_031, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_1NBS_007, HL_3PYO_047, HL_2ZJR_061, HL_3CUN_001, HL_3IAB_001, HL_3O58_066, HL_3O58_065, HL_1U9S_002, HL_3O58_060, HL_1G1X_003, HL_3D0U_004, HL_3G78_003, HL_2IL9_003, HL_1KH6_002, HL_2ZJR_005, HL_2QBG_048, HL_1S72_060, HL_3PYO_071, HL_1RLG_002, HL_1RLG_001, HL_3NPN_001, HL_3O30_014

Children motifs

Child motifCommon motif instancesOnly in HL_33402.1Only in the child motif
HL_33402.2
Compare
HL_4A1B_003, HL_3U5F_032, HL_2QBG_010, HL_3V2F_008, HL_1S72_008, HL_3U5H_003HL_2ZJR_008HL_4IOA_008
Annotations
  • (7)
  • Basepair signature
    cWW-tSH-R-R-R
    Heat map statistics
    Min 0.10 | Avg 0.28 | Max 0.68
    Help

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