Motif HL_35015.1 Version HL_35015.1 of this group appears in releases 3.77 to 3.82
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3R4F_002 | 3R4F | 0.8777 | 2 | A | pRNA | A | 51 | U | 52 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW | |
| 2 | HL_8G9Z_002 | 8G9Z | 0.7797 | 0 | E | Selenocysteine transfer RNA | G | 31||A | C | 32||A | A | 36||A | A | 37||A | A | 38||A | C | 39||A | ncWW | ncWW | |
| 3 | HL_2JLT_001 | 2JLT | 0.0000 | 4 | A | R06 | G | 5 | G | 6 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW | |
| 4 | HL_6VMY_005 | 6VMY | 0.4274 | 4 | A | Cobalamin riboswitch | U | 333 | C | 334 | A | 339 | G | 340 | G | 341 | A | 342 | cWW | ||
| 5 | HL_6UFH_003 | 6UFH | 0.6342 | 2 | A | RNA (167-MER) | G | 70 | G | 71 | G | 74 | G | 75 | C | 76 | C | 77 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGGUUGU | 1 |
| GCAAAC | 1 |
| GGUCCCAGAC | 1 |
| UCUGCGAGGA | 1 |
| GGUUGGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGUUG | 1 |
| CAAA | 1 |
| GUCCCAGA | 1 |
| CUGCGAGG | 1 |
| GUUGGC | 1 |
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