Motif HL_35086.1 Version HL_35086.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5E81_235 | 5E81 | 0.3499 | 0 | 1K | tRNA | A | 31 | C | 32 | U | 33 | U8U | 34 | U | 35 | U | 36 | T6A | 37 | A | 38 | PSU | 39 | cWW | ncWW | |
2 | HL_4WSM_209 | 4WSM | 0.1386 | 0 | 1K | tRNA | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | 1MG | 38 | PSU | 39 | G | 40 | cWW | ||
3 | HL_1N32_033 | 1N32 | 0.0000 | 0 | Y | ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA | C | 31 | U | 32 | U | 33 | G | 34 | A | 35 | G | 36 | G | 37 | PSU | 38 | G | 39 | cWW | ||
4 | HL_4P5J_002 | 4P5J | 0.5699 | 0 | Anticodon loop related | A | tRNA-like 3' UTR element | C | 25 | U | 26 | C | 27 | G | 28 | A | 29 | C | 30 | A | 31 | C | 32 | G | 33 | cWW | |
5 | HL_387D_001 | 387D | 0.7253 | 1 | A | RNA Pseudoknot | G | 4 | A | 5 | A | 6 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW | |
6 | HL_3PDR_003 | 3PDR | 0.7416 | 1 | X | M-box riboswitch (ykoK leader) | G | 127 | A | 128 | U | 129 | C | 131 | U | 132 | U | 133 | G | 134 | U | 135 | C | 136 | cWW | ||
7 | HL_6XKO_003 | 6XKO | 0.7919 | 1 | A | PreQ1-III riboswitch | G | 63 | C | 64 | U | 65 | G | 67 | C | 68 | G | 69 | G | 70 | U | 71 | C | 72 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
ACU(U8U)UU(T6A)A(PSU) | 1 |
CUUGAGG | 1 |
CUUGAGG(PSU)G | 1 |
CUCGACACG | 1 |
GAAGUGCAAC | 1 |
GAUGCUUGUC | 1 |
GCUGGCGGUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CU(U8U)UU(T6A)A | 1 |
UUGAG(1MG)(PSU) | 1 |
UUGAGG(PSU) | 1 |
UCGACAC | 1 |
AAGUGCAA | 1 |
AUGCUUGU | 1 |
CUGGCGGU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Anticodon loop related (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.52 | Max 0.79
Coloring options: