Motif HL_35113.1 Version HL_35113.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-5 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8SYK_003 | 8SYK | 0.2885 | 3 | A | RNA device 43 truncation mutant 3 (U100C) | G | 57 | A | 58 | A | 59 | G | 60 | U | 63 | A | 64 | C | 65 | A | 67 | C | 68 | C | 69 | cWW | ncWWa | ||
| 2 | HL_3EGZ_001 | 3EGZ | 0.0000 | 3 | B | Tetracycline aptamer and artificial riboswitch | G | 12 | A | 13 | A | 14 | G | 15 | U | 18 | A | 19 | C | 20 | A | 22 | C | 23 | C | 24 | cWW | ncWWa | ntSW | |
| 3 | HL_2A64_003 | 2A64 | 0.9820 | 2 | A | RNase P class B | C | 97 | G | 98 | A | 99 | A | 100 | U | 101 | C | 103 | A | 104 | A | 106 | A | 107 | G | 108 | cWW | tSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGAAUACGACC | 2 |
| CGAAUCCAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGAAUACGAC | 2 |
| GAAUCCAUAA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.29 | Avg 0.50 | Max 0.99
Coloring options: