Motif HL_35425.1 Version HL_35425.1 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3RG5_002 | 3RG5 | 0.0000 | 0 | A | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | ncWW | tWW |
| 2 | HL_1VWW_005 | 1VWW | 0.6079 | 1 | 5 | 28S ribosomal RNA | U | 203 | U | 204 | C | 205 | U | 206 | G | 207 | A | 208 | U | 209 | G | 211 | A | 212 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUUCAAAC | 1 |
| UUCUGAUCGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUCAAA | 1 |
| UCUGAUCG | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_35425.1 | Only in the parent motif |
|---|---|---|---|
| HL_19528.1 Compare | HL_3RG5_002 | HL_1VWW_005 | HL_3P49_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_35425.1 | Only in the child motif |
|---|---|---|---|
| HL_94212.1 Compare | HL_1VWW_005 | HL_3RG5_002 | HL_1P6V_002 |
| HL_59516.1 Compare | HL_3RG5_002 | HL_1VWW_005 | HL_2CZJ_001, HL_3P49_004 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.61 | Avg 0.30 | Max 0.61
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