Motif HL_59516.1 Version HL_59516.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-6 | 4-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3P49_004 | 3P49 | 0.9146 | 1 | A | Glycine riboswitch | C | 122 | U | 123 | A | 124 | A | 125 | U | 126 | U | 128 | U | 129 | A | 130 | G | 131 | cWW | ncWS | |||
| 2 | HL_2CZJ_001 | 2CZJ | 0.0000 | 1 | B | tmRNA | G | 23 | G | 24 | G | 25 | U | 26 | U | 27 | G | 29 | C | 30 | C | 31 | U | 32 | cWW | ncWW | ncWW | ncWW | |
| 3 | HL_3RG5_002 | 3RG5 | 0.9184 | 0 | A | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | ncWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAUUUUAG | 1 |
| GGGUUCGCCU | 1 |
| GCUUCAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAUUUUA | 1 |
| GGUUCGCC | 1 |
| CUUCAAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_59516.1 | Only in the parent motif |
|---|---|---|---|
| HL_35425.1 Compare | HL_3RG5_002 | HL_2CZJ_001, HL_3P49_004 | HL_1VWW_005 |
| HL_66174.2 Compare | HL_2CZJ_001 | HL_3RG5_002, HL_3P49_004 | HL_4LX6_003, HL_1Y26_003, HL_3RKF_003, HL_3FO4_003, HL_3LA5_003 |
| HL_68904.1 Compare | HL_3P49_004 | HL_3RG5_002, HL_2CZJ_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.91 | Avg 0.62 | Max 0.97
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