Motif HL_19528.1 Version HL_19528.1 of this group appears in releases 1.5 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3P49_004 | 3P49 | 0.0000 | 1 | A | Glycine riboswitch | C | 122 | U | 123 | A | 124 | A | 125 | U | 126 | U | 128 | U | 129 | A | 130 | G | 131 | cWW | ncWS | ||
| 2 | HL_3RG5_002 | 3RG5 | 0.9732 | 0 | A | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | ncWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAUUUUAG | 1 |
| GCUUCAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAUUUUA | 1 |
| CUUCAAA | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19528.1 | Only in the parent motif |
|---|---|---|---|
| HL_29084.1 Compare | HL_3P49_004 | HL_3RG5_002 | |
| HL_67367.1 Compare | HL_3RG5_002 | HL_3P49_004 | HL_2XZM_032 |
Children motifs
| Child motif | Common motif instances | Only in HL_19528.1 | Only in the child motif |
|---|---|---|---|
| HL_35425.1 Compare | HL_3RG5_002 | HL_3P49_004 | HL_1VWW_005 |
| HL_68904.1 Compare | HL_3P49_004 | HL_3RG5_002 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.97 | Avg 0.49 | Max 0.97
Coloring options: