Motif HL_35619.1 Version HL_35619.1 of this group appears in releases 1.8 to 1.8

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4
1	HL_4MGM_003	4MGM	0.1485	4		B	tRNA glycine	C	13	A	14	G	15	A	20	G	21	cWW
2	HL_3L0U_001	3L0U	0.0000	5		A	tRNA	C	13	A	14	G	15	A	21	G	22	cWW
3	HL_3AL0_001	3AL0	0.4075	4	tRNA D-loop	E	tRNA	U	13	A	14	A	15	A	21	G	22	cWW	cWS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAGUGGUAG	1
CAGUCGGUAG	1
UAACGGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUGGUA	1
AGUCGGUA	1
AACGGUA	1

Release history

Release	1.8
Date	2013-11-04
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in HL_35619.1	Only in the parent motif
HL_12595.2 Compare	HL_3L0U_001	HL_3AL0_001, HL_4MGM_003	HL_2ZUF_001, HL_1QU2_001
HL_81752.1 Compare	HL_3AL0_001	HL_3L0U_001, HL_4MGM_003	HL_1EIY_001

Children motifs

Child motif	Common motif instances	Only in HL_35619.1	Only in the child motif
HL_35619.2 Compare	HL_3AL0_001, HL_4MGM_003	HL_3L0U_001	HL_2CSX_001

Annotations: (2)
tRNA D-loop (1)
Basepair signature: cWW-cWS-R
Heat map statistics: Min 0.15 | Avg 0.22 | Max 0.43

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