Motif HL_35619.2 Version HL_35619.2 of this group appears in releases 1.9 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4MGM_003 | 4MGM | 0.1403 | 4 | B | tRNA glycine | C | 13 | A | 14 | G | 15 | A | 20 | G | 21 | cWW | ||
| 2 | HL_2CSX_001 | 2CSX | 0.0000 | 6 | tRNA D-loop | C | RNA (75-MER) | C | 13 | A | 14 | G | 15 | A | 21|||A | G | 22 | cWW | |
| 3 | HL_3AL0_001 | 3AL0 | 0.4057 | 4 | tRNA D-loop | E | tRNA | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUGGUAG | 1 |
| CAGCUGGUCAG | 1 |
| UAACGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUGGUA | 1 |
| AGCUGGUCA | 1 |
| AACGGUA | 1 |
Release history
| Release | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|
| Date | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_35619.2 | Only in the parent motif |
|---|---|---|---|
| HL_35619.1 Compare | HL_3AL0_001, HL_4MGM_003 | HL_2CSX_001 | HL_3L0U_001 |
| HL_93633.1 Compare | HL_2CSX_001 | HL_3AL0_001, HL_4MGM_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_35619.2 | Only in the child motif |
|---|---|---|---|
| HL_35619.3 Compare | HL_3AL0_001, HL_4MGM_003 | HL_2CSX_001 | HL_1EIY_001 |
| HL_19363.1 Compare | HL_2CSX_001 | HL_3AL0_001, HL_4MGM_003 |
- Annotations
-
- tRNA D-loop (2)
- (1)
- Basepair signature
- cWW-cWS-R
- Heat map statistics
- Min 0.14 | Avg 0.22 | Max 0.43
Coloring options: