Motif HL_35677.2 Version HL_35677.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6YML_001 | 6YML | 0.6345 | 1 | A | Chains: A,C | C | 15 | G | 16 | G | 17 | C | 18 | U | 19 | C | 21 | C | 22 | U | 23 | G | 24 | cWW | ||
| 2 | HL_6YL5_005 | 6YL5 | 0.6435 | 1 | I | Chains: A,B,C,D,E,F,G,H,I,J,K,L | C | 15 | G | 16 | G | 17 | C | 18 | U | 19 | C | 21 | C | 22 | U | 23 | G | 24 | cWW | ||
| 3 | HL_5J7L_134 | 5J7L | 0.6011 | 1 | DA | LSU rRNA | U | 59 | G | 60 | C | 61 | U | 62 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | |
| 4 | HL_7D8O_001 | 7D8O | 0.0934 | 1 | Pseudoknot with intercalation | B | Antitoxin RNA | U | 4 | G | 5 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH |
| 5 | HL_2XDB_001 | 2XDB | 0.0000 | 1 | Pseudoknot with intercalation | G | TOXI | U | 4 | G | 5 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH |
| 6 | HL_2XD0_006 | 2XD0 | 0.1277 | 1 | Pseudoknot with intercalation | W | TOXI | U | 4 | G | 5 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUUUGCUA | 3 |
| CGGCUUCCUG | 2 |
| UGCUAAUCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUUUGCU | 3 |
| GGCUUCCU | 2 |
| GCUAAUCU | 1 |
- Annotations
-
- Pseudoknot with intercalation (3)
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.42 | Max 0.67
Coloring options: